YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	40	0.71
Transmembrane Helix	41	63	0.90
Cytoplasmic	64	85	0.89
Transmembrane Helix	86	107	0.91
Non-Cytoplasmic	108	124	0.88
Transmembrane Helix	125	145	0.92
Cytoplasmic	146	152	0.82
Transmembrane Helix	153	173	0.93
Non-Cytoplasmic	174	189	0.89
Transmembrane Helix	190	210	0.91
Cytoplasmic	211	223	0.86
Transmembrane Helix	224	246	0.90
Non-Cytoplasmic	247	257	0.76
Transmembrane Helix	258	276	0.76
Cytoplasmic	277	284	0.69
Transmembrane Helix	285	305	0.93
Non-Cytoplasmic	306	342	0.77
Transmembrane Helix	343	366	0.89
Cytoplasmic	367	381	0.89
Transmembrane Helix	382	406	0.88
Non-Cytoplasmic	407	414	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVKNKPVG KSLLGGAMII AGTTVGAGMF SLPVVGSGMW FGYSILMLLG IWFCMLMSGL  60
   61 LLLETNLHFE PGASFDTLTK ETLGQFWRIV NGVSIAFVLY ILTYAYISGG GSIVNHSLQG 120
  121 MGIELPQSVA GLVFTVVLAC IVLISTKAVD RITTIMLGGM IITFFLAIGN LLIEIDVTKL 180
  181 LEPDGNQRFI PYLWVALPFG LASFGYHGNV PSLVKYYGKD SSTIIKAIFV GTFIALIIYV 240
  241 CWLVATMGNI PRSQFSEIIA QGGNMGVLVG ALSKVMESSW LNSMLTLFAN LAVASSFLGV 300
  301 TLGLFDYLAD LFGFDDSRSG RMKTAIVTFV PPTVFGLLFP DGFLIAIGFA ALAATVWAVI 360
  361 VPALMAYKSR QLFPNHQGFR VFGGTPLIIL VVLFGVVTGA CHLLAMANLL PQFS