YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALHFDTLV WHWPIAIYLF LAGASAGAMF FAVLLKHFVL KHNAYQSGFV QAACIVAPVA  60
   61 VMAGLGILVL DLTKPFDFWK ILVFYNPTSV MSMGVLILLI YQVFMFMWIG LLFRKPIDAW 120
  121 CENRFPIVLK LTALLSRFEA TITGLLVIFS LALGAYTGFL LSALPGYPML KNPVLPLLFL 180
  181 ASGLSSGAAC SLLGGVLLNA NPNAKEVHFI HKVEIPLILV EIVLIFTFFM GLVLTGGQSK 240
  241 LAAFNAIGYG FWGWIFWLGI VGIGLSGPLA MNLFMTATSK RKWAYVAGTA CLSLIGVLLL 300
  301 RNFILYTGQM TVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.93
Transmembrane Helix	15	35	0.94
Cytoplasmic	36	47	0.78
Transmembrane Helix	48	70	0.93
Non-Cytoplasmic	71	89	0.88
Transmembrane Helix	90	112	0.89
Cytoplasmic	113	139	0.86
Transmembrane Helix	140	160	0.87
Non-Cytoplasmic	161	176	0.80
Transmembrane Helix	177	198	0.95
Cytoplasmic	199	214	0.88
Transmembrane Helix	215	236	0.90
Non-Cytoplasmic	237	252	0.84
Transmembrane Helix	253	274	0.92
Cytoplasmic	275	282	0.87
Transmembrane Helix	283	305	0.92
Non-Cytoplasmic	306	313	0.94