YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375925, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWQALWLSV KLSSITVLVL VPLSILAGRA LAYRQFIGKS WVEALIMVPL VLPPTVIGYY  60
   61 LLVGLGSQSW LGQWLERLTG QQLVFHFSGL VLASVLVNIP FALQPIQRAF EAVPHDVRDA 120
  121 AACCGMSKLK ILLKIELPMV WPGVLTAIVL CFSHVLGEFG VVLMMGGNIA GETKTISISI 180
  181 YDSVQAFDFG AAGTMSLVLL LFAITALALT TSLSRRLGGQ RGANHR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.78
Transmembrane Helix	12	33	0.88
Cytoplasmic	34	40	0.93
Transmembrane Helix	41	63	0.89
Non-Cytoplasmic	64	82	0.89
Transmembrane Helix	83	102	0.95
Cytoplasmic	103	136	0.95
Transmembrane Helix	137	157	0.92
Non-Cytoplasmic	158	188	0.91
Transmembrane Helix	189	213	0.86
Cytoplasmic	214	226	0.95