YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24375923, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.22
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIQKIRYQ LLCILSYLPL LCMTFITHAE QPNTTTISVG VLANGWGPFQ QVNDQITTGF  60
   61 SVELIQLLAK NLHYQIDWKI YPDWMSLYSA GCNGEVDVLL DAFRTTERTQ CLMFSRSYYT 120
  121 SPTVVVIRYD SRFFRDVSEF GQARIAVEKG FSTEKLVKLH YPTVTEVTFS NTEQALSSVI 180
  181 DKTTDAYIGN LHVANQYISA HPELLIVAQA PLMMENLHLG ITKNNSLLVT QLDNALMALS 240
  241 VEERNALEVT WLGMGDLHFL GHSNFLLRPN EREWLAGLPS LRVGFVDDWM PFSSVNNNGI 300
  301 LVGLIADYLE QFREKLGLDY AAQKTRTWNE IQSALINHEI DLAIIPTRLK AQYPDWHMSE 360
  361 VFTSFPIVIA TARNSPRIAG LSELNFQRVV ITDNLLLPSI KKAYPNIDVV VSANPDEGLT 420
  421 LVAKGNAAAY MGNLAVVAML IDNKFIDELR VAAPTPYKDE LAVAIREPYW QLIPLINRVF 480
  481 SSMSEKEKQQ IRNTWLAVNY SEGISWHTLI TTLLPIAIGL LLFIGGLTIA YLKLRQEINK 540
  541 RRIVENALAI AKENAELATK RKAEFLAAMS HEIRTPMNGL VGMAEQLSFT PLGIEQKQMV 600
  601 QIISNGAEEI LQIINNILDF SKIDMGKMRL ESTPILLREV LDSTLNMVMN DLRTKDLSLY 660
  661 LHVDQGVAAR VTGDSLRIKQ ILFNWVSNAI KFTERGFIEV SVKLEAEEEG QQLLLIGVQD 720
  721 TGIGMNADTQ ARIFNIFEQA DVSTTRSYGG AGLGLAISHT LAEMMGGDII LNSAPHLGTF 780
  781 IGLRIRLPVV AQDEFDEQLQ GLQAYIAISD IKLRHTLSWH LASLGIVLTQ NKANADLLFT 840
  841 DNASDDRQHI LCTHFNEALG YRYQNDQCLL NVNPLTSQAV KDVCYINMGW IDTIVSTPQR 900
  901 DITLKVNWPE CKILLIEDHQ LNQILVQRQL KQLRLDCDIA EHGVQALDLM QQTHYDLILC 960
  961 DCRMPVMDGY TFTQQVRAQE IDGQHVPIIA LTANVLNEQK QRCAAVEMDD LLAKPLHLNE1020
 1021 LHEMLLKWLP HSKPALIDIK ILENAFGRRE ALSKMLLMFK DELESSLKDI QLTAPQLADN1080
 1081 IHRTAGTISM LGLTSIAEQA WLLEEKIRQE DSNNGEVELT EFRAIIIQLI SELNAIIHTS1140
 1141 N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle