YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.40
Transmembrane Helix	19	41	0.90
Cytoplasmic	42	47	0.38
Transmembrane Helix	48	70	0.86
Non-Cytoplasmic	71	86	0.42
Transmembrane Helix	87	116	0.69
Cytoplasmic	117	135	0.45
Transmembrane Helix	136	160	0.81
Non-Cytoplasmic	161	169	0.49
Transmembrane Helix	170	191	0.91
Cytoplasmic	192	233	0.59
Transmembrane Helix	234	255	0.92
Non-Cytoplasmic	256	269	0.53
Transmembrane Helix	270	291	0.88
Cytoplasmic	292	300	0.53
Transmembrane Helix	301	326	0.79
Non-Cytoplasmic	327	344	0.57
Transmembrane Helix	345	377	0.60
Cytoplasmic	378	418	0.43
Transmembrane Helix	419	443	0.85
Non-Cytoplasmic	444	447	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILMEFIVVL GCLLLGTRYG GMGLGLISGI GLFLLTFVFG LAPGQPPVQV MLTILAVIGC  60
   61 AAVLQTAGGL DVMMQFAERL LRRHPQYITI LAPLTTWTLT FLCGTGHVVY TMFPIISDIA 120
  121 LKKNIRPERP MAVASVASQM AICASPVSVA VVSMVSILAA QQGVGHAYSM LEILMVSVPA 180
  181 SLCGVLVAAL WSLRRGKDLD KDEEFQERIQ DPVQRAFIYD KGETLLNQTF PKQAYWATGI 240
  241 FFAAIAAVVL LGSFSELRPV FEEKGKLAPL SMNLVIQMMM LIAGAFILMS CKVKPAEIAN 300
  301 GPVFKAGMVA IFSVFGVAWM SDTFFISHMD VLKENLSHVV QNQPWTYALV LFLISKLVNS 360
  361 QAAALTAIAP MGLALGVDPK LLIAFLPASY GYFVLPTYPS DLACIGFDRS GTTKIGKFII 420
  421 NHSFIIPGLI GVGTASTVGY LLATALL