YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPTNPTRL GRRVVVTGIG GITALGHDWL SIESSLKAQK NCVVTMADWD KYDGLNTRLA  60
   61 APVTDFEVPS HYSRKKIRSM GRVSIMATRA SELALIDAGL LDDPIVTSGE MGIAYGSSTG 120
  121 STDPITAFGD MLKTGDMSGV TATSYIRMMA HTTAVNVGVF FGLKGRIHTT SSACTSGSQG 180
  181 IGYAYEAIKY GQQTLMLAGG GEELCPTEAV VFDTLFATST KNTTPELSPR PFDAQRDGLV 240
  241 IGEGACTLVL EELEHAKARG AKIYAEIVGF GTNSDGQHVT QPNSETMEIA IRLALKDAAL 300
  301 TPDAIGYVNA HGTATDRGDI AESHATHAVF GADMPISSLK SYTGHTLGAC GALEAWVSIE 360
  361 MMNAGWFAPT LNLDNIDPEC AALDYIRGEP RALDTDYVMS NNFAFGGINT SLIFKRWKTT 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	9	0.53
Transmembrane Helix	10	29	0.49
Non-Cytoplasmic	30	420	0.97