YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375816, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHPAYLLRR LALVWLLLAT IPSLLLLTQN QLFPLIDLQS PLATALYWLT TTGTAPYGVV  60
   61 TVLVVLALAY RYMPKALFIN LFLAISLSQV LSLSTSHALK SFFKEPRPNL VYLAEQALPE 120
  121 EAQLTPDTFY QLAHSDRSRV IAEALTELQT RPSGLTLTPN IKQHWEDEIG YSFPSGHTIF 180
  181 AVTLVLTASY YLLLAGLPIF TSALLAWGLL MGLSRMLLGM HWPQDVLFST LLAAIISSLS 240
  241 IFLVSKIRIF TQAFVKASSQ

Type	Start	End	Confidence
Cytoplasmic	1	10	0.83
Transmembrane Helix	11	29	0.91
Non-Cytoplasmic	30	45	0.82
Transmembrane Helix	46	69	0.88
Cytoplasmic	70	76	0.80
Transmembrane Helix	77	99	0.77
Non-Cytoplasmic	100	172	0.83
Transmembrane Helix	173	194	0.73
Cytoplasmic	195	198	0.51
Transmembrane Helix	199	219	0.78
Non-Cytoplasmic	220	225	0.63
Transmembrane Helix	226	250	0.83
Cytoplasmic	251	260	0.78