YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLLKKSGD LIETSFKILF LCCAMAGVIS VSTIGWFVFS EGLPALKEAG VISFVLGKEW  60
   61 LPPALYGILP MIIASLISTT GAIIIGVPIA IFTAIFLAEL APKWLANLVR PAVELLAGIP 120
  121 SVVYGFFGLV IIVPGIEAIF DIPAGNTLLA GIIVLAIMIL PTIITISETS LRALPSVYKE 180
  181 GALALGASHI YTIFNVLVPA AKSGILTGVI LGVARAIGET MAIIMVMGNA PAMPGSLLEP 240
  241 ARTLTANIAM EMSYATGIHS SALYATGIVL LAFIVLLNGS LLYLNRKKAY

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	39	0.89
Non-Cytoplasmic	40	69	0.86
Transmembrane Helix	70	97	0.88
Cytoplasmic	98	114	0.78
Transmembrane Helix	115	136	0.90
Non-Cytoplasmic	137	146	0.64
Transmembrane Helix	147	166	0.94
Cytoplasmic	167	203	0.67
Transmembrane Helix	204	228	0.67
Non-Cytoplasmic	229	261	0.74
Transmembrane Helix	262	284	0.89
Cytoplasmic	285	290	0.85