YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350709, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	59	0.87
Transmembrane Helix	60	82	0.85
Cytoplasmic	83	90	0.66
Transmembrane Helix	91	113	0.89
Non-Cytoplasmic	114	138	0.88
Transmembrane Helix	139	161	0.89
Cytoplasmic	162	170	0.79
Transmembrane Helix	171	190	0.89
Non-Cytoplasmic	191	201	0.86
Transmembrane Helix	202	225	0.89
Cytoplasmic	226	235	0.94
Transmembrane Helix	236	258	0.88
Non-Cytoplasmic	259	314	0.84
Transmembrane Helix	315	339	0.81
Cytoplasmic	340	359	0.79
Transmembrane Helix	360	380	0.94
Non-Cytoplasmic	381	415	0.70
Transmembrane Helix	416	437	0.92
Cytoplasmic	438	454	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSWHPSVYL AQRTSKAAKN ILAAPPLILS ISFIFLILIG TLILKLPIST TVPVTWSQSL  60
   61 FNATSAVTVT GLVVFDVGTV YTTFGQVVIA LLIQLGGLGI MTFAIVTLLA LGAKIGFLQN 120
  121 TIAKEAYNST NTATLVTTAK SVLIFSLCVE LIGMIILAVS WSDELGWRTS LFHGFFYTIS 180
  181 AFNNAGIGLS PDSLMPYVED PIINLTITAL FIIGGLGFTV WIDLWRKKRW DKLTTYSKMM 240
  241 IIGTISINAI AVLAIYCIEY NNPKTLVPLS ETGKWLASWF QAVTPRTAGF NTLAMNELED 300
  301 ATTAIMLMLM FIGGGSLSTA SGIKVVTFMV LILATYGYLR RYDFVYVYHR GISKDTISKA 360
  361 LALAMISVGT IWASIFFLLL SENASMIDII FEAVSAFGTV GLSRGLTSNL TVTGQFIIIF 420
  421 LMFMGRLGPL TLAYFLASPK SKRIRYPETK LTIG