YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVKILGANL QAADQVALLR TLGLLLQIGL TLFAADTFGL SLQMEPLMHV FVLEVLYLSL  60
   61 TLALRKPLFA KERGLFIALS LDTLFWISWL YFSGGATNAF ISLLLLPIAL AAVTLPIWAP 120
  121 WSLTAISTLA YSVMIFTVPE SQMQHHGMDM SSHYLGMWFN FVISALVLTT SVALIAKRMR 180
  181 RQDAQLAYMR EGQLRQEQLV ALGTVSAQMA HQLATPLSTL HLLLDELREE TPEPSITLVE 240
  241 METALGRCEH TLAELRLATE SIRDRRQRPQ NITELVVGLK QKTQLLMPQT ALNWLITCEP 300
  301 KLLEEKQILT DMSLTPAIMA LIENAARASV ETIGTSQVDI SVDCSPSEGQ AYLQIRDYGA 360
  361 GIAPSLLPQL GTLLIESPKG LGVALLLSHA SLERLGAELI LANHPQGGTV AQIRFTLLAP 420
  421 KVPTGEIV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	38	0.87
Non-Cytoplasmic	39	46	0.76
Transmembrane Helix	47	64	0.86
Cytoplasmic	65	84	0.55
Transmembrane Helix	85	111	0.80
Non-Cytoplasmic	112	116	0.38
Transmembrane Helix	117	138	0.77
Cytoplasmic	139	153	0.42
Transmembrane Helix	154	176	0.91
Non-Cytoplasmic	177	428	0.60