YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350324, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDGFIYSLV LSGEQAGSTL SPEQLDNWDP KDGLVWIHLR YRHKKARHWV LHCGLNKVES  60
   61 DALLAEDTRP RTVLAGEGVL LALRGVNLNP DSAPEDMVAV RIYADNQRII STCERELQSV 120
  121 KDVAGSIMAG TGPTTTGDFI VAICERLTIR KVDFIDTLEE QLLELEEQVV SGNVKDLRTD 180
  181 IAELRRQTVA LRRYLGPQKE AFAKMLSEQF VLFNEPEKLK MRETTNNLIR TIEDLDALRD 240
  241 RANVTQEELL SQQSEQLNKR LYFLSLVSVI FLPLGFLTGL LGVNIGGIPG ADNNFAFTSF 300
  301 CIILVSLVAL QMVILYRFKW L

Type	Start	End	Confidence
Cytoplasmic	1	260	0.90
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	294	0.71
Transmembrane Helix	295	316	0.94
Cytoplasmic	317	321	0.76