YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQEHDMRPI LKHPLNVRIF HYILLLSFLP LAATGLLLFF KPLSQEGMQL TYDVHIIAGI  60
   61 VMALDAVAFT IMAFDRVVLF IARVFSFSGR DVKWFMVLGG YPQKFLLGKK VPIPPMNKYN 120
  121 SGQKLFGACV LIGGTVLILS GLVLWFIPHA APRDIVWFLG QAHLVSGLVL TAFLPVHLFL 180
  181 AVYRFDDFKA MMIHGNVPYH DAAEYTPLWV KNEIAPVATN GEQLTSK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	40	0.94
Non-Cytoplasmic	41	54	0.87
Transmembrane Helix	55	78	0.86
Cytoplasmic	79	124	0.95
Transmembrane Helix	125	147	0.94
Non-Cytoplasmic	148	161	0.80
Transmembrane Helix	162	183	0.92
Cytoplasmic	184	227	0.97