YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375353, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDLFLSGS LFSEPLLSEY EAAALLLSLK VSTLAVIASL PLGILCAWLL ARVEFPGKAI  60
   61 FDSILHLPLV LPPVVVGYLL LISMGRQGII GQWLYNWFGL SFSFSWRGAA LAAAVVSFPL 120
  121 MVRAIRQSFE TVDIRLEQAA RTLGSSRWRV FLTITLPLTS PGIVSGMIIA FARSLGEFGS 180
  181 TITFVSNIPG ETRTIPLAMY SFIETPGAEY QAMRLCVISI VIALTSLLAS QWLTQKALKR 240
  241 TANVC

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.81
Transmembrane Helix	31	51	0.90
Cytoplasmic	52	63	0.83
Transmembrane Helix	64	84	0.90
Non-Cytoplasmic	85	102	0.82
Transmembrane Helix	103	125	0.85
Cytoplasmic	126	149	0.93
Transmembrane Helix	150	172	0.93
Non-Cytoplasmic	173	209	0.95
Transmembrane Helix	210	233	0.87
Cytoplasmic	234	245	0.93