YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	24	0.95
Cytoplasmic	25	31	0.86
Transmembrane Helix	32	50	0.94
Non-Cytoplasmic	51	56	0.82
Transmembrane Helix	57	76	0.97
Cytoplasmic	77	86	0.90
Transmembrane Helix	87	107	0.95
Non-Cytoplasmic	108	129	0.92
Transmembrane Helix	130	153	0.90
Cytoplasmic	154	172	0.86
Transmembrane Helix	173	189	0.96
Non-Cytoplasmic	190	195	0.66
Transmembrane Helix	196	214	0.88
Cytoplasmic	215	222	0.64
Transmembrane Helix	223	242	0.81
Non-Cytoplasmic	243	246	0.68
Transmembrane Helix	247	267	0.89
Cytoplasmic	268	469	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGLVTAAY IIAAVLFIFS LAGLSKQETA KHGNLFGITG MAIALLATIF NPDTSGVAWI  60
   61 IVAMVIGGAI GVRLALKVEM TEMPELVAVL HSFVGMAAVL VGFNSFIDLH PEQVSQVGVG 120
  121 AHMTGAMLNI HLVEVFLGIF IGAVTFTGSI VAFGKLRGLI SSKPLMLPHR HKLNLIAVLV 180
  181 SLGLLVYFVQ TGGTMPALLL MTLIAFAFGW HLVASIGGAD MPVVVSMLNS YSGWAAAAAG 240
  241 FMLSNDLLIV TGALVGSSGA ILSYIMCKAM NRSFISVIAG GFGTDGVASS SDQEMGEYRE 300
  301 TNAEDVADML KNATSVIITP GYGMAVAQAQ YPVAEITQKL RDRGVKVRFG IHPVAGRLPG 360
  361 HMNVLLAEAK VPYDIVLEMD EINEDFSDTD VVLVIGANDT VNPAAMEDPG SPIAGMPVLE 420
  421 VWKAQNVIGF KRSMNTGYAG VQNPLFFKDN TQMLFGDAKA SVEAILKAL