YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350028, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGIPRESL VGETRVAATP ATVEQLKKLG FEVVVEANAG LLSSFDDAAF EAAGAKITTE  60
   61 VWQADLIFKV NAPTDAEIAL IKEGATLISF IWPAQNAELV EKLSKRNINV MAMDMVPRIS 120
  121 RAQSLDALSS MANIGGYRAV VEAAHHFGRF FTGQITAAGK VPPAKVLVIG AGVAGLAAIG 180
  181 TAGSLGAIVR AFDTRLEVAE QIESMGGQFL KLDFTNEDGS SSDGYAKTMS DEFIAAEMAL 240
  241 FAEQAKEVDI IITTALIPGR PAPKLITKAM VDSMKSGSVI VDMAAQAGGN CEYTQPGELF 300
  301 VTDNGVKVIG FTDLPGRLPA QSSQLYGTNL VNLMKLMCKE KDGTASINFD DVVMRNMTVV 360
  361 KEGQVTFPPP PISVSAAPVK PTVKIEAKAA QAKAPSKLKY ILAALGAAGF AAVASVAPAE 420
  421 FLSHFTVFIL SCVVGYYVVW NVSHSLHTPL MSVTNAISGI IVVGALLQIG QGSTLVTVLA 480
  481 FIAVLIASIN IFGGFTVTQR MLKMFRKD

Type	Start	End	Confidence
Cytoplasmic	1	124	0.79
Transmembrane Helix	125	141	0.56
Non-Cytoplasmic	142	165	0.71
Transmembrane Helix	166	189	0.80
Cytoplasmic	190	397	0.98
Transmembrane Helix	398	417	0.92
Non-Cytoplasmic	418	421	0.79
Transmembrane Helix	422	440	0.93
Cytoplasmic	441	449	0.75
Transmembrane Helix	450	469	0.94
Non-Cytoplasmic	470	476	0.73
Transmembrane Helix	477	497	0.95
Cytoplasmic	498	508	0.90