YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375171, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFQAARYRF NKLSQPTDSN AFNKWLCLLP AVTALFSFNA WSATQDIKLV SAGAGVTELV  60
   61 LALDAADELV AVDATSYVPE QLSSVAKLGY HRMLSAEGIM ALSPTLVVGS DVMGPETTLN 120
  121 VLKQANIKVV QLPSSADEQQ LMSNIDTLAQ SLNRTDKAAP LKQELHQRLD KLNKQKQQLS 180
  181 QHNAQPKILF MLLQEGRGAR VGGKGTAADT IIALSGAKNI ADFEGYKTLS QEGILALQPD 240
  241 VILLSNRSEK TDSQTNSQTT HALLKEMPLL AHTPAGQNGH IQTLAPQALL GGLGISAIGA 300
  301 AETLADALLT QGKTAGK

Type	Start	End	Confidence
Signal Peptide	1	42	0.90
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	317	0.98