YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFKPLKVG EAPLIKWSLI TLAVLLAMLL LLLPLVSIFQ QAFVGGWERY IEHLSQPDSL  60
   61 HAIGLTLMVA ALTVPINLVF GVMLAWSVTR FEFPGRKLLI TLIDIPFAVS PVVAGLLYLL 120
  121 LYGNSGWLGA WLFEHDLQVM FAWPGILLVT IFVTCPFVAR ELIPLMQQQG ASEEEAAVIL 180
  181 GASWWQLFRR VTLPNIKWAL IYGVILTNAR AVGEFGAVAV VSGNIRGETN TLPLHVQLLY 240
  241 EDYQAEAAFA SASLLALIAL FTLMLKALVE WRQQRSLSAN NNQQQSQSL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	39	0.89
Non-Cytoplasmic	40	61	0.90
Transmembrane Helix	62	86	0.88
Cytoplasmic	87	97	0.89
Transmembrane Helix	98	121	0.90
Non-Cytoplasmic	122	138	0.92
Transmembrane Helix	139	159	0.93
Cytoplasmic	160	197	0.92
Transmembrane Helix	198	218	0.83
Non-Cytoplasmic	219	246	0.88
Transmembrane Helix	247	269	0.90
Cytoplasmic	270	289	0.98