YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTRLPLRPR GLEQLSTTVK RLFISLYLLL SLSFLGIGWT LDSLWKKNVD ENNPLDAPLV  60
   61 AFAQLLTQLP EESRRDYLSA LPTDPQLPLN LLSPDQIALP KDQILTSNHL VTTTTSEGEQ 120
  121 FQFIQVGEQV LMAGPIEIDP RADLRNLFTL FFYLSLAFVA LIWVGPLSRD LSILRKATKD 180
  181 FGEAKWDTRI NLSNRSQVKP LANTFNEMAR HISALIENQK HLSNAVSHEI RTPLARLKFA 240
  241 LALMPMYCKP DSDEQTRQDF LNEMQLDIKE MENLLQELLT YASLESQREG IPLDEYDLIT 300
  301 LINQCIKRLS TLSETPITLH ADMDALPLVG EPALIERALQ NLLTNAQRFA RHQILIEVSQ 360
  361 TPQRVTLSVS NDGEPIPEVD LPKVFEPFYR SQSVQNGNKG HGLGLAIIKR IMQRHQGEVS 420
  421 VSSNPTQTRF TLSWPKKREI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.67
Transmembrane Helix	21	41	0.83
Non-Cytoplasmic	42	146	0.67
Transmembrane Helix	147	167	0.84
Cytoplasmic	168	440	0.57