YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375045, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.75
Transmembrane Helix	17	36	0.93
Cytoplasmic	37	56	0.73
Transmembrane Helix	57	76	0.63
Non-Cytoplasmic	77	77	0.53
Transmembrane Helix	78	109	0.70
Cytoplasmic	110	141	0.82
Transmembrane Helix	142	162	0.91
Non-Cytoplasmic	163	178	0.82
Transmembrane Helix	179	198	0.93
Cytoplasmic	199	206	0.83
Transmembrane Helix	207	228	0.90
Non-Cytoplasmic	229	247	0.77
Transmembrane Helix	248	270	0.69
Cytoplasmic	271	302	0.82
Transmembrane Helix	303	322	0.92
Non-Cytoplasmic	323	345	0.87
Transmembrane Helix	346	369	0.89
Cytoplasmic	370	384	0.92
Transmembrane Helix	385	407	0.90
Non-Cytoplasmic	408	414	0.78
Transmembrane Helix	415	437	0.89
Cytoplasmic	438	488	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETIVNFLN ALLWGKLLVY GLVGAGLYFT LRLVFIQLTH FKHSLKIMTM SRQGCESGLS  60
   61 SFQVFCTSMA ARVGAGNMAG VAVAIGAAGP GAVFWMWLIA MLGMATAMVE STLAQVYKVR 120
  121 DANGQFRGGP SYYMEKGLGQ RWMGVLFAFF LIIAFGLVFN AVQANTITGA MERVFGFDPT 180
  181 YVGIGLVLAS GFVIMGGLRK VARVSEFIVP IMALAYILIA FIIVLFNLEQ LPAVISLIVK 240
  241 SAFGWQEAAA GGVAYTVAQA MQAGIARGLF SNEAGMGSAA NVAASASPNP NHPASQGFVQ 300
  301 MMGVFVDTIV ICTATAAIIL LSGDIGSSDD GIRLTINAMS NHVGDWGGAF IAVAIFLFCF 360
  361 TSIIANYSYA ETNVMFLTGN STKALPLFRL CVLGMVMFGS VAKISLVWNL ADVSMGLMAT 420
  421 VNIVALLLLS GLAIRVINDY CDQLKSGKMP EFDRSKFPEL MEQLDDGIWQ DNSVNELAKA 480
  481 PSESAISR