YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLTILHQS LYQHCPEIHQ KRLNTLMVAC KALINADCLT LTHLGRHIDG TSTHTKHSIK  60
   61 RMDRLLGNPH LHHERLAVYQ WHAKWLLTAH TMPTILVDWS DMREGRELIA LRTSIAIKGR 120
  121 SITLYERTFP LVLQGTQTAH NQFLNELHKV LPDNITPLIV TDAGFRNPWF RKVEQLGWYW 180
  181 LGRVRGLSVY RLHPFGRQFS LKALYPKASR RAKHVGRVAL SVKKPLLCEM VLFRAPSKGR 240
  241 KGQRSTTTDC HHTAQWTYEL TAKEPWALVT NLTIEAMSPQ KLVNIYQKRM QIEETFRDLK 300
  301 SPAYGFGLRH SRTRYAARMD ILLLIALLVQ LAFWWVGLYG ETQQLQRHFQ ANTVKKRNVL 360
  361 STIRMGKELL RRRHDYPISA DDLLCAAKKL AQLSLTHGCW GYEL

Type	Start	End	Confidence
Cytoplasmic	1	318	0.88
Transmembrane Helix	319	339	0.91
Non-Cytoplasmic	340	404	0.91