YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLSQDQAL SRLSLKNPIH FLALGFGSGL AAKAPGTFGT LAAIPVYLLL AQLPLAWYLA  60
   61 ATLVCVIAGI YICDKAANDM GVHDHGAIVW DEVAGLLITM IAAPAGILWL AVGFALFRLF 120
  121 DILKPWPIRW LDAKVEGGFG IMIDDVLAGV FALICLQVIV VISQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	44	0.84
Non-Cytoplasmic	45	53	0.70
Transmembrane Helix	54	73	0.93
Cytoplasmic	74	92	0.80
Transmembrane Helix	93	117	0.89
Non-Cytoplasmic	118	139	0.80
Transmembrane Helix	140	161	0.91
Cytoplasmic	162	164	0.66