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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24374817, gi|...
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSNVGSQC YQKRLTLMSR CYYLSIFLVF WSFIVSAQAK AAYYPLAQQI SSENGLSQNV  60
   61 VLALEEDNYG RIWVGTQDGL NLINNNELLV FRRDQAEHRL SGTVITDLTL DQQGRLWVAS 120
  121 DVGLDYIDTT TLESHVITLN QSISHMLLHT EQTIFYLSSQ KLYQFQINTG QVQEVKLPEL 180
  181 FQIINTLGSY DEQHLLLIGP NGFGVLNLST GDVTPLQPDI PAGTYKASTI SAERIWISQM 240
  241 EQGLYSCNLQ GLDCRTYSKA NQKLPTNNIA QIYQQDTALF LATDKGIGRL DLITDKLEWI 300
  301 YPHSQNNAYQ ASRIARNLIP AKSGDIFVGT FNGLYRIPNT YKEVQAFNTG IGGYPSNQLA 360
  361 VNKVMLNGQE RLVIAQPDKL TLWTLDASIL RLYREYDYPQ GFVPTNLFVD GGDIYLSSLT 420
  421 NNNLILTPHN GAFTSLEERF AQLGNVQLFN MNQPQEDIRV FHLLTSMKVY QQRQNKWQLL 480
  481 WEKPFLTGSA TAEYWQGRLY VASYQNGLMS ASMDNDWQKP QQWQQHHGLG IAINLFAQKD 540
  541 KLYVLTANLG LFQVDSSSPI SITQVSSRDK LASQTLVCAI RDHNGQLILS SHKGLVIFDS 600
  601 QQESLIYLSS LQGTHEQEFS QFSCGTLNNV PYFAGERGLT LVFDSQAIKS PAPQITWTHL 660
  661 DVDGLTYRLG SSGTGKLTAP EFIRLHFVAT PSDLPKQASY RYRIKSLSDE WVELKSSFIP 720
  721 MINLRPGSYQ VELESRDFSG RSSPIALATL EIAPGFWESS LAISLYIFIG LVVIALLVSH 780
  781 RIKADRSLLA LEVEKNRHQQ DYSRKLEHEV QIRTNELAQK KEEAEEANTA KTRFIAAASH 840
  841 DLKHPIGLIR LQLEQIEDNK LSYKINTSLS FLEQLVSSIV ELSRLDARVL VPQISSFDLG 900
  901 IFIAKVAEEH LTLAQSFRLN LMTDIKSDVW VASDSLLLRR VIDNILSNAI KISDPDTSVS 960
  961 LSVCQERQHA VIEVIDQGPG MTQQMQAELF TPFKRWTSRY QGSGLGLSVV KGIADLLGIS1020
 1021 LSIRSTLGEG TQFTLKLPLI DKPTFSHIED EAAIFHLGIV EDDYEQLNHL CSSLMVRGIK1080
 1081 VSGYRHAISL LQDKTAIFDA ILSDIDIGTE QDGLAYLVEY RQRLTDAKPL IYMSGNPEAG1140
 1141 LRIPSQTDLF FFSKPLKLGK LMWLLNQSKR K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle