YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349471, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.92
Transmembrane Helix	22	44	0.92
Cytoplasmic	45	55	0.95
Transmembrane Helix	56	77	0.89
Non-Cytoplasmic	78	97	0.83
Transmembrane Helix	98	120	0.91
Cytoplasmic	121	128	0.94
Transmembrane Helix	129	149	0.95
Non-Cytoplasmic	150	186	0.95
Transmembrane Helix	187	210	0.89
Cytoplasmic	211	220	0.83
Transmembrane Helix	221	240	0.93
Non-Cytoplasmic	241	389	0.99
Transmembrane Helix	390	411	0.92
Cytoplasmic	412	422	0.88
Transmembrane Helix	423	446	0.88
Non-Cytoplasmic	447	472	0.94
Transmembrane Helix	473	496	0.88
Cytoplasmic	497	518	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVEEVVELS RLQFALTAMY HFLFVPLTLG LAFLLAIMVS LYVMTDKHIY KDMTKFWGKL  60
   61 FGINFALGVS TGLAMEFQFG TNWSYYSHYV GDIFGAPLAI EGLMAFFLES TLVGMFFFGW 120
  121 DRFSKRQHLA VTWLVALGSN LSALWILVAN GWMQNPVGSV FNYETMRMEM TSFAEVVFNP 180
  181 VAQVKFVHTV ASGYVTGAMF VLAISSYYIL KKRDLPFARR SFAIAASFGM AAILSVIVLG 240
  241 DESGYKVGEA QRVKLAAIEA EWHTEPAPAA FTAVGFPNQE TMETDFAVKI PYAMGIVATR 300
  301 SLDEQVTGIH DLISEHEVRI RNGMKAYAML VKLRAGDTSP ELRAEFEAAK VDLGYGLLLK 360
  361 RYTNNVVDAT EEQIKAAAKD SIPNVAPMFW SFRVMVGLGF VMLFVFAAAF WQSTRHQIEE 420
  421 NKWVLKAALF SLPLPWIAIE CGWFVAEYGR QPWTISEVLP TFMSASSLTT GDLWFSIISI 480
  481 SLFYTVLLVI EIFLMLKFAR LGPSSLKTGR YHFEKLEA