YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEMLRVI WWALIGVLFI GFAVTDGFDM GVGALLPIIG KDDTERRIMI NTIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA VSFSGFYVAM MLVLFALYMR PVGFDYRSKI ENPKWRKSWD 120
  121 WALFVGGFVP PLIIGVAFGN LLQGVPFNFD EFLRATYHGG LFGLLNPFGL LAGLVSVTMF 180
  181 MMQGAAWLQM KTEGELRVRA ANATQLFALL VAVLFAAAGV WLANGIDGYV VTSALDHNAV 240
  241 SNPTLKTVAV EAGAWLANYD KYPITMLFPV LGVALPLLVI VVSRLNRSGF AFLFSSLAVA 300
  301 MVILTCGAAM FPFVMPSSLD PNVSLTMWDA TASEMTLTVM TWAAIVFVPI VLSYTVWTYF 360
  361 KMFGRLSRKH IEDNKASLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.76
Transmembrane Helix	9	28	0.92
Non-Cytoplasmic	29	76	0.75
Transmembrane Helix	77	99	0.89
Cytoplasmic	100	118	0.92
Transmembrane Helix	119	142	0.89
Non-Cytoplasmic	143	161	0.90
Transmembrane Helix	162	187	0.80
Cytoplasmic	188	202	0.88
Transmembrane Helix	203	223	0.92
Non-Cytoplasmic	224	261	0.96
Transmembrane Helix	262	282	0.93
Cytoplasmic	283	289	0.83
Transmembrane Helix	290	314	0.89
Non-Cytoplasmic	315	337	0.91
Transmembrane Helix	338	360	0.92
Cytoplasmic	361	379	0.98