YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349387, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESSGERS EEPTGRRLDQ AREKGQVARS KELGTATVLL SAATGLYMLG PGIAKALSNV  60
   61 FERVFTMDRA AIFDTNQMFN VWGVVGSEIG WPLLKIMLLI VVVAFIGNVS LGGMNFSTQA 120
  121 MMPKASKMSP IAGFKRMFGV QALVELTKGI AKFSVVALAS YLLLSHYFND ILLLSADHLP 180
  181 GNVYHALDLL VWMFILLCSS VLVIVVIDVP FQIWNHNKQL KMTKQEVKDE YKDTEGKPEV 240
  241 KGRVRQMQRE LAQRRMMAEV PNADVIVVNP EHYAVAIKYD VKRSAAPFVI AKGVDEVAFK 300
  301 IREVARAHNI AIVTAPPLAR AIYHTTKLDQ QVPEGLFTAV AQVLAYVFQL RQYQKGRGRK 360
  361 PIPIPLNQPI PDDLKY

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	54	0.86
Non-Cytoplasmic	55	92	0.91
Transmembrane Helix	93	116	0.88
Cytoplasmic	117	148	0.84
Transmembrane Helix	149	168	0.81
Non-Cytoplasmic	169	188	0.88
Transmembrane Helix	189	211	0.92
Cytoplasmic	212	376	0.94