YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374704, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQITQNPN TYQSDARFPQ VQDDEIDLRE LFAVIWRGKW IILAVTALFA VGAVVFAIKQ  60
   61 PNIYKSEALL APASEEQGGG LSALASQFGG LASLAGVNLG GKGGTDKTEL AIQVLKSRQF 120
  121 TSEFIQKHNI LADLMAAEKW DRDADKLIYD PELFNEQTNT WVREVKAPFK PEPSMQEAYK 180
  181 AFSKMIVVNK AKDTGMVTLS VEHLSPTVAQ QWVTWLIQDI NKVMKERDVA EAHRSTEFLN 240
  241 KQIASTNVAD IKTVLYKLIE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICAL 300
  301 GTMLGGMLGV MLVLVRHFMR KEQNLESRV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.88
Transmembrane Helix	38	58	0.92
Non-Cytoplasmic	59	78	0.83
Transmembrane Helix	79	100	0.64
Cytoplasmic	101	294	0.80
Transmembrane Helix	295	318	0.88
Non-Cytoplasmic	319	329	0.78