YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349341, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAKEYIPW LLGFIFVNII ATFIMLDSNE LIGDLKGTVV SNPYILLLSL ILIVITYFFL  60
   61 MWPFFISVFS IKIKKLKFNR DENVISLRLG FFILFMQVCF FLFNSYYGVN VAGTNNKTAD 120
  121 TPLALIWVII PADALFVVYY AFYRDSKFFK VNLIFWLFSN IIRGWAGVIL FVIFFEWCRL 180
  181 VRKNALSFTK IFIAVLLVLI LYPLLTIAKW VIRASGGRDF SFEVLYDAVF KNLNEQSYLD 240
  241 LIYFGLEHII GRLQLTSILN EIINMKDKLQ FLYQKNDFQP FWMEGLHGIF IERLFYGEKT 300
  301 RNLGVAFTEY ANFNWIFEVG DWNINVSLPA WFFISPWFSI LYLLYIFSLC FFSVFLVKLI 360
  361 GQTNSARDLI WLSWLVYLVP LWLGTFVALI YTLFVFLLLK CFFATKVHQN ASSTLLQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	26	0.95
Non-Cytoplasmic	27	43	0.92
Transmembrane Helix	44	66	0.93
Cytoplasmic	67	83	0.91
Transmembrane Helix	84	107	0.87
Non-Cytoplasmic	108	122	0.91
Transmembrane Helix	123	143	0.95
Cytoplasmic	144	152	0.93
Transmembrane Helix	153	175	0.90
Non-Cytoplasmic	176	187	0.83
Transmembrane Helix	188	208	0.90
Cytoplasmic	209	337	0.91
Transmembrane Helix	338	360	0.87
Non-Cytoplasmic	361	377	0.71
Transmembrane Helix	378	399	0.89
Cytoplasmic	400	417	0.71