YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349338, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIIHVIVGL PASGAELFLQ RLSFEQRNAN YHITVISLTT EGTLGEALRS RGVNVLFLGL  60
   61 SGVLSVPLVV YKLRKHISNI RPDIIQSWMY HADFFSSLAM FGLNKKLIWS VRCSNIPAGS 120
  121 YFTLALMKIC SLLSYVSPAR VCYVAEASKV FHQSQGYSPK KSITIANGYD FSSLVYSEKK 180
  181 RNSFRESLSL DKHVTVFGLV GRFHKDKGQD ILLEAFSKLK ADISNYKILL VGRECNNDNH 240
  241 QLVNLINSYG LDENVILLGE QNDISGLLSA MDIYVMGSRT EGFPNALAEA MSIGLPCIAT 300
  301 NVGDAALLAD KYAVLSEANS NSLADAILAV VKMPVEQRKM LGIHAADHVR KSFSIVEIKK 360
  361 LYDQLYHSLL EKK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.55
Transmembrane Helix	52	71	0.64
Non-Cytoplasmic	72	373	0.76