YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374491, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKNSLALV IAKAASQPFA SLDSFMGKTL RLTDGDFWSQ LMATSKSGKT VNVNTAMQLA  60
   61 AVWACVRRIS ETVAMLPLGL YERQSDGGRI QVQNSLSTVL SIKPNADMTA MQFWEAVLAS 120
  121 LLLKGNAFIE IHRSGGEIIA LDFLMPHRMD IDLDDSGSLI YWYTPRNGSR RQIKKQNMMH 180
  181 IPAFSLDGLI GLSTISYGAN VFGGAMSAED VSASTFKNGM TKTVAFKVDR VMNKEQRAEF 240
  241 REYVKTITGA MNAGKSPVLE QGITPELIGI NPIDAQLLES RNYSVEEICR WFLVDPSLIG 300
  301 FGGKDSNWGT GLEQKMIGFV TLTLSSWIRR IEQSISINLL TPAQRQTQYA QYNLEALLRG 360
  361 DSASRAEFYS KMTQNGIYTR DDCRVKENLP RRGGNADVLT VQTNLAPIDQ LGAQSESAKV 420
  421 QAALNNWLNQ DN

Type	Start	End	Confidence
Signal Peptide	1	20	0.85
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	432	0.98