YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349046, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHTTIKLS GSLASRFGRV HQRLLETGTT TEAFSALKNT LQGFELFIKE QAKLGLRYAI  60
   61 FRNGRNTGMD EFELAGTNEI RIVPVISGSK RGGILQTILG AVMIVVGAYF GQGWLVQAGV 120
  121 GLVAGGVVQM LSPQAKGLNG REAAENAPSY AFGGAVNTTA AGNPVGIGYG KRRIGGAIIS 180
  181 AGIYAEDIAT SKRPIQSGGG NGNGNQQEP

Type	Start	End	Confidence
Cytoplasmic	1	91	0.95
Transmembrane Helix	92	116	0.78
Non-Cytoplasmic	117	149	0.53
Transmembrane Helix	150	167	0.40
Cytoplasmic	168	209	0.75