YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349014, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDSHSNASQ ASANGHESVP VSSHFSCYYQ AEIYGKSKVV KAPWQSFGLA VFAGAFIALA  60
   61 FVFYLTVTTG AGDSAWGLVR LVGGIAFSLG LILVVICGGE LFTSSVLSSV AWAQKQVTTS 120
  121 ELLKCWTRVY LGNFVGAMLM VGLIMAAGLY ELDGGNWGLN ALKVAQHKLH HTWIQAFSLG 180
  181 ILCNMLVCLG IWMTFASRES LTKAILLILP VAMFVSSGFE HSIANLFMVP FGITIQAVAS 240
  241 PEFFASLGVT QEQFADLTVA NFIFKNLIPV TLGNIVGGGV IVGLGYWWIE QGQIALPDPQ 300
  301 KSHQPHFFAS PLHTEKVKKS QESK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	67	0.93
Non-Cytoplasmic	68	83	0.79
Transmembrane Helix	84	108	0.84
Cytoplasmic	109	128	0.89
Transmembrane Helix	129	150	0.94
Non-Cytoplasmic	151	172	0.94
Transmembrane Helix	173	195	0.92
Cytoplasmic	196	203	0.84
Transmembrane Helix	204	224	0.88
Non-Cytoplasmic	225	266	0.58
Transmembrane Helix	267	289	0.90
Cytoplasmic	290	324	0.57