YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374394, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTAFIQGMG IGGSLIIAVG AQNAFVLKQG IKRAYPLPIA LLCSIIDALM ITAGVAGLGH  60
   61 IIETFPTIKH VASFGGAAFL IWYGANALKA SFVTKGMEMD HAQNADTLRK AILTTLGISL 120
  121 LNPHLYLDTV VLLGSISTQF EDAHRPWFGA GAVLASFIWF FSLSFGARLL APIFSRPAAW 180
  181 RYLDRFIWLT MWSIAAAIIW PYLAAI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.86
Transmembrane Helix	6	27	0.89
Cytoplasmic	28	36	0.88
Transmembrane Helix	37	61	0.88
Non-Cytoplasmic	62	69	0.75
Transmembrane Helix	70	90	0.88
Cytoplasmic	91	106	0.91
Transmembrane Helix	107	127	0.84
Non-Cytoplasmic	128	146	0.82
Transmembrane Helix	147	170	0.87
Cytoplasmic	171	185	0.85
Transmembrane Helix	186	204	0.96
Non-Cytoplasmic	205	206	0.83