YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374386, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.90
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	42	0.75
Transmembrane Helix	43	68	0.71
Non-Cytoplasmic	69	75	0.76
Transmembrane Helix	76	95	0.94
Cytoplasmic	96	114	0.91
Transmembrane Helix	115	134	0.95
Non-Cytoplasmic	135	153	0.88
Transmembrane Helix	154	174	0.91
Cytoplasmic	175	182	0.79
Transmembrane Helix	183	205	0.93
Non-Cytoplasmic	206	248	0.97
Transmembrane Helix	249	271	0.89
Cytoplasmic	272	283	0.83
Transmembrane Helix	284	306	0.90
Non-Cytoplasmic	307	389	0.97
Transmembrane Helix	390	414	0.92
Cytoplasmic	415	434	0.94
Transmembrane Helix	435	454	0.96
Non-Cytoplasmic	455	460	0.82
Transmembrane Helix	461	484	0.91
Cytoplasmic	485	491	0.93
Transmembrane Helix	492	514	0.89
Non-Cytoplasmic	515	531	0.79
Transmembrane Helix	532	552	0.84
Cytoplasmic	553	578	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQGLTYLI VGLSFALYIG IALWTRAGST KEFYVAGGGV HPVVNGMATA ADWMSAASFI  60
   61 SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFLGER YYSQAARTVA 120
  121 VICAIFICFT YIAGQMRGVG VVFSRFLEVE VDTGVYIGMA VVFFYSVLGG MKGITYTQVA 180
  181 QYCVLIFAFM VPAIFLSVMM TGHIIPQIGF GAQLLDAAGN NSGVYLLDKL NNLSVDLGFA 240
  241 PYTDGSKSMI DVLCITGALM VGTAGLPHVI VRFFTVPKVK DARVSAGWAL VFIAIMYTTV 300
  301 PALAAFSRVN MIETINGPDQ KGVAYETAPN WIKNWEKTGL IKWDDKNGDG KIYYATGKIE 360
  361 DAASTNEMKI DNDIIVLATP EIANLPAWVI ALVAAGGLAA ALSTSAGLLL VISTSVSHDL 420
  421 LKKNLMPNIS DKKELMYARL AAGIGIVIAG YFGVNPPGFV AAVVAFAFGL AASSLFPAII 480
  481 MGIFSKTMNK EGAIAGMILG LFFTSGYIVY FKFIDPTANV PANWFLGISP EGIGMVGMVI 540
  541 NFVVAAIVSK VTAATPVHVQ EMVESIRFPK GAGEASDH