YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24348856, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRRVVVTG LGLVTPVGNT VDTTWKALLS GKSGIAPITK FDASEFTTRF SGSVKDFDVE  60
   61 QYLTKKDARK MDLFIQYGMA AGIQAIQDSG LDMSKVNPGR VGTAIGAGMG GMWLIEQNHS 120
  121 ALMNGGPRKI SPFFVPSTII NMIAGHLSIM YGMTGPNFAV TTACTTGVHN IGFAARTIAY 180
  181 GDADVMVAGG AEDVTCPLGV GGFGAAKALS TRNDDPTAAS RPWDKDRDGF VIGDGAGVMV 240
  241 MEEYEHAKAR GATIYGELVG FGMSGDAFHM TSPPSDGAGA AAAMVNAVND AKLPLEKIGY 300
  301 INAHGTSTPA GDKAEAAAVK SVFGDHAYNL LVSSTKSMTG HLLGAAGAVE AIFTLLALRD 360
  361 QAVPPTINLD NPDEGCDLDF VAHTARDVKL DYALCNSFGF GGTNGSLLFK KV

Type	Start	End	Confidence
Signal Peptide	1	20	0.77
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	412	0.85