YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24348828, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNSNVALP LSISAGIHIG VIIILAIGID FTHKPEPVQQ VSAPAVKAVM VDQQQVANQV  60
   61 EKLKQEKRDT ERRERERQAE LERKAQEAKQ AREREQAQLK QLAEERKQQE IETQKANEAA 120
  121 KAAQLKQQQE KEKAQKAEAD RKLKEQERKL AEDAAQKAAE KRKVEEAAVA KAEADRKQKE 180
  181 AEAKAKAEAD AKAKADKAKA DAEAKAKAEA KAKADAKAKA DAEAKALAQQ EQEMADALAA 240
  241 EQAALSQTMN KQMQTEVGKY TAMIKSTIQR NLVVDESMRG KTCTVSVRLA NDGFVISSQT 300
  301 QGGDPNVCRA TKAAILKAGK LPVSPDPAVY NLMKEINLIV EPTFN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	29	0.88
Non-Cytoplasmic	30	345	0.91