YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ETCE_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYREIAWQ GLWKNNPGLV QRLGLCPLLA VTTTLTNALG LGIATMLVLI GSNVLISLVR  60
   61 DYVPKEIRIP VFVMIIAALV TAVQLLVNAY AYGLYMSLGI FLPLIVTNCI IIGRAEAFAS 120
  121 RNNAFSSAFD GLMMGLGFTL VLVLLGATRE ILGQGTLFDG ADQLLGPWAK ALTFQVWQVD 180
  181 TSFLLAMLPP GAFIVMGLLI ALKNVIDKKL RERQPETAVQ PSVARARITK VS

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.51
Transmembrane Helix	38	59	0.85
Cytoplasmic	60	68	0.81
Transmembrane Helix	69	87	0.94
Non-Cytoplasmic	88	93	0.65
Transmembrane Helix	94	115	0.87
Cytoplasmic	116	127	0.81
Transmembrane Helix	128	148	0.91
Non-Cytoplasmic	149	182	0.93
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	232	0.94