YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373935, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISPLNSHT LGSTSLGLIL LVAPLMVHAT PQNALTASQD TKTIKSIVDS AVNPLMAEYG  60
   61 IPGAVLGISM NGQQYFFPYG VSSKNTAEKV SKNTLFEIGS ISKTFTATLA TYAQFEGKLT 120
  121 LTDKVSQYLP ELAGSHFDQI NLINLATHTA GDLPMQVPDN VTNNTELISY FKAWQPAYPA 180
  181 GTHRNYANPS IGLLGVIAAK QLGQGFPEAV EQTLFRQLGM TNSYLMVPTN KMADYAQGYN 240
  241 KQDQPVRLNP GVLADEAYGI KTTAVDLLRF VETNMQQHSV PARLQRAIDA THTGYFDVGP 300
  301 MTQEMIWEHY PYPISLDNLL AGHTQDVVFG SMPVKAITPP QSPQQNVWIN KTGSTGGFAA 360
  361 YVAYIPAKKL AMVLLSNKNY PVPPRVTVGY QILTGLEKLP N

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	401	0.99