YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24348243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.86
Transmembrane Helix	28	46	0.85
Non-Cytoplasmic	47	52	0.64
Transmembrane Helix	53	71	0.91
Cytoplasmic	72	76	0.84
Transmembrane Helix	77	97	0.91
Non-Cytoplasmic	98	103	0.81
Transmembrane Helix	104	126	0.86
Cytoplasmic	127	136	0.79
Transmembrane Helix	137	157	0.89
Non-Cytoplasmic	158	180	0.90
Transmembrane Helix	181	199	0.96
Cytoplasmic	200	207	0.83
Transmembrane Helix	208	228	0.87
Non-Cytoplasmic	229	250	0.85
Transmembrane Helix	251	274	0.82
Cytoplasmic	275	328	0.85
Transmembrane Helix	329	347	0.95
Non-Cytoplasmic	348	354	0.64
Transmembrane Helix	355	375	0.90
Cytoplasmic	376	384	0.84
Transmembrane Helix	385	413	0.84
Non-Cytoplasmic	414	585	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPSLVSFM PGLALMLQYE KQWLRDDVRA GLSVAAVALP VAIAYAQLTG VNAAVGLYSC  60
   61 VLPMLVYALF GTSRQLIVGP DAATCAVIAA VVTPLAAGDS MKHWQLVMTM TAMTGFWCLI 120
  121 ASRFRLGVLA DFLSKPILMG LLNGVAITII VGQFSKIFGF TFDERYLIER LSGAPSYLTK 180
  181 THWPTLLMGL VTLLTYALVK RYRPQWPASM CAMAVAAFLV WAFNLTSFNI NVVGEVSAGL 240
  241 PSFQAPVFDI GIARELVVPA LNLAMVSFVS MMLTARSFAA KNGYDIDADK EFRALGIANI 300
  301 ASALSQGFAV SGADSRTAVN DANGGKSQLV SIIAAVLIAL VALFFTAPLK YIPSSALGVV 360
  361 LVIASISLID LKALWNLRVR DRSAFLLACT TLFSVLFIGV IPGITLAVLL GLFQFLATVM 420
  421 RPTDQVLGLD HKGVIRSVDD SGKAKSVPGV FIYRFNSPLT YFNATYFKRR LLEKFIREPD 480
  481 PVDCIIIDAV PCFTHLDLSV MAMLADLHQL LKKRGIRLVL AGRKRQMLGW FEQAGMQSGE 540
  541 GGILIRPDLY LALKMNQSYK QALAEGQAPV IKKAPEDDVL LYSHL