YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373625, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	30	0.88
Non-Cytoplasmic	31	38	0.66
Transmembrane Helix	39	61	0.85
Cytoplasmic	62	79	0.92
Transmembrane Helix	80	102	0.91
Non-Cytoplasmic	103	121	0.87
Transmembrane Helix	122	143	0.89
Cytoplasmic	144	149	0.86
Transmembrane Helix	150	169	0.92
Non-Cytoplasmic	170	182	0.79
Transmembrane Helix	183	205	0.85
Cytoplasmic	206	217	0.77
Transmembrane Helix	218	237	0.91
Non-Cytoplasmic	238	273	0.90
Transmembrane Helix	274	295	0.90
Cytoplasmic	296	304	0.86
Transmembrane Helix	305	326	0.89
Non-Cytoplasmic	327	332	0.79
Transmembrane Helix	333	355	0.92
Cytoplasmic	356	370	0.89
Transmembrane Helix	371	391	0.94
Non-Cytoplasmic	392	395	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNKFFGSL LLIAGTTIGA GMLALPIASA GLGFGMSSMI MLIFWALMAY TALLMVEIHQ  60
   61 FAPSDASLNQ LARHLLGTKG QVVACIALMF LLYALCAAYI AGGGEQVHQK LTSWLGLALP 120
  121 PQAGAILFTL LIGTIVGLGT HCVDLINRVL FSLKIIALIL MLALLLPQVE GTHLLELPLE 180
  181 QGLIVSAIPV IFTSFGFHGS IPSVVRYLGI EVKALRKIML LGSALPLLIY LLWQLGSQGV 240
  241 LSQSQLMTNQ SLSGFISQLA SVLHSQYLSS AISVFADLAL ATSFLGVSLG LFDFIAANLR 300
  301 QEDNATGRSV TAAITFVPPL GFALFYPQGF ITALGYAAIA LVILAIFLPV SMVWVQRKQR 360
  361 DKAKLPQGYR VAGGTLGLVL ALLCGLAVIS AQLLG