YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITAYIYENR QLTVTEINIQ DSIPASTIWL DLYKPDDAER EWLSHFSVEE VPDEEDINEI  60
   61 EASARFYQNS DGLHINSLFP QRVGQDVRGV NVSFNLRTNF LLTIREEDVG LIRLLRNYLR 120
  121 LGRLEVSTPQ ELFLELFNLK VDYLSDLIED VYTVLENVGE QVFDSEELDD VFKLITLQED 180
  181 SNGKIRLSLL DTQRSLRYMQ RYYRGQLSDE HLKDLREMLS DIESLMPHSQ FIFDKLNFLL 240
  241 DAAMGFSGLQ QNKIIKIFSV AAVVFLPPTL IASSYGMNFN GMPELQWQYG YPMAILMMLA 300
  301 SAAGTYFFFK RKHWL

Type	Start	End	Confidence
Cytoplasmic	1	253	0.96
Transmembrane Helix	254	275	0.90
Non-Cytoplasmic	276	288	0.86
Transmembrane Helix	289	309	0.95
Cytoplasmic	310	315	0.94