YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLKAKLEL PGNDSIELPV KQGSAGFDVI DISKLGSKGY FTFDPGFLAT ASCESAITYI  60
   61 DGDQGILLHR GYPIEQLAVD SDYLDLCYLL LYGELPTKEQ YAEFVHTVKT HTMVHEQIAF 120
  121 FFRGFRRDAH PMAMLCGVTG ALSAFYQDSL DVNDPRHREI AAYRLVSKMP TIAAMCYKYS 180
  181 SGQPFVYPRN DLSYAGNFLS MMFAVPCEEY KVNPIVERAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLQMLEEIG SVDRIPEFIA RAKDKNDPFR 300
  301 LMGFGHRVYK NFDPRAKVMR ETCHEVLKEL KVQDPLLDVA MELERIALED EYFISKKLYP 360
  361 NVDFYSGIIM KAIGIPTSMF TVLFALSRTV GWIAHWKEML DQPGHKISRP RQLYTGETAR 420
  421 DFVDLDKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	371	0.70
Transmembrane Helix	372	390	0.58
Cytoplasmic	391	428	0.53