YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373474, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPWILAIRP RTLPAAIGPL LIGNILALHL ERFSWLIAAT SMLCAILLQI AVNLANDYFD  60
   61 FKNGIDTAER IGPVRVTQSG MIPPNTVRNA MVLCLLLALA VGSYLIWHGG WPIAILAAAA 120
  121 ILGALGYSGG PYPLASHGLG EVAAFVFFGL VAVVGSYYLQ AGDTTINAWL LGCAIGLFNA 180
  181 AIMLVNNTRD IRTDTQAGKH TLAVRIGEAQ AKVLYQALIY LPFGLVIAGF LLGILPGLPV 240
  241 LLAGLSLLIA RKLSSDFYAV SGEALNPLLG RTAKLTMIFS TLFSVGLVFT A

Type	Start	End	Confidence
Cytoplasmic	1	9	0.77
Transmembrane Helix	10	30	0.82
Non-Cytoplasmic	31	34	0.67
Transmembrane Helix	35	55	0.89
Cytoplasmic	56	85	0.76
Transmembrane Helix	86	107	0.84
Non-Cytoplasmic	108	112	0.55
Transmembrane Helix	113	131	0.89
Cytoplasmic	132	138	0.55
Transmembrane Helix	139	159	0.91
Non-Cytoplasmic	160	165	0.60
Transmembrane Helix	166	186	0.89
Cytoplasmic	187	216	0.63
Transmembrane Helix	217	249	0.74
Non-Cytoplasmic	250	269	0.54
Transmembrane Helix	270	290	0.76
Cytoplasmic	291	291	0.58