YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347705, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFNLPIALT LFRLFLLPIF VVLFYLPYSW TPFVAAFVFW LAALTDALDG YAARKLKQLT  60
   61 RFGAFLDPVA DKLMVITALV LLVDQYADIW LTLPALFMIG REIVISALRE WMAELGKRGT 120
  121 VAVSWIGKYK TAAQMVAIIG LIWQYNPLMI QAAFVLLYIA AVLTFWSKMS YILAAWKDLT 180
  181 AE

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	28	0.89
Non-Cytoplasmic	29	32	0.66
Transmembrane Helix	33	53	0.70
Cytoplasmic	54	62	0.66
Transmembrane Helix	63	83	0.54
Non-Cytoplasmic	84	88	0.50
Transmembrane Helix	89	105	0.68
Cytoplasmic	106	125	0.60
Transmembrane Helix	126	143	0.67
Non-Cytoplasmic	144	147	0.68
Transmembrane Helix	148	167	0.89
Cytoplasmic	168	182	0.77