YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373369, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYLLRRLN LFLATSLVMI GVLFYATGQF PVERTFALTG IHSPSASQLV QIEQDYKLDS  60
   61 NKAMQFIAYL QQRLGGNLGV SVTSHQSVAM ELSTVLPASF ELAFMAAVIA IGLGVPLGVL 120
  121 ASQSQHKLTQ NTIMAITLTG YSVPVFWLGL YLSLWFGVDL GWLPISGQLN LLYEIKPVTG 180
  181 FMLVDILLSD SQYRIPAFKD ALLHIILPAT TLAVLPFTVV VRSTRSAMMN VMNQTFIRAA 240
  241 EARGMHTNTI ILRHALPNAL IPVLKHLGLM LGSFASYAIV VEVIFSWPGV GSWLVSGIYQ 300
  301 RDYTVIQGGI LAVALLIIFL SILIEVLHTV FNPLSRKDLY ASS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	28	0.89
Non-Cytoplasmic	29	101	0.95
Transmembrane Helix	102	121	0.95
Cytoplasmic	122	132	0.86
Transmembrane Helix	133	155	0.87
Non-Cytoplasmic	156	200	0.92
Transmembrane Helix	201	221	0.93
Cytoplasmic	222	266	0.84
Transmembrane Helix	267	287	0.85
Non-Cytoplasmic	288	304	0.73
Transmembrane Helix	305	327	0.89
Cytoplasmic	328	343	0.75