YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373368, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPVKIYQED QIASPMMRVW QNFSANPFAL AGLWTIAFLL LLTLFGPLIA PFAPEAQDPR  60
   61 ALLLPPSWDP SGTVSHFLGT DDLGRDIFSR LLHGAHLTFG MALMIVGTAL FTGFIIGSLS 120
  121 GMMRGLKSSI LGHLLDALLS IPSLLMAILV VAVMGPGLEN VFWAVGIALT PQFVRSIHQS 180
  181 VHEELQKEYV TAARLDGANS IQIFWYVIMP NVWEVVIIQT TLAISAAILD IAALGFLSLG 240
  241 AQAPSPEWGA MVAQGMDNLL TAPWTVTIPG LAILFSVLAI NLVGDGLRSA LAPIRN

Type	Start	End	Confidence
Cytoplasmic	1	24	0.88
Transmembrane Helix	25	49	0.84
Non-Cytoplasmic	50	96	0.88
Transmembrane Helix	97	119	0.90
Cytoplasmic	120	131	0.78
Transmembrane Helix	132	155	0.85
Non-Cytoplasmic	156	202	0.59
Transmembrane Helix	203	218	0.38
Cytoplasmic	219	219	0.26
Transmembrane Helix	220	241	0.85
Non-Cytoplasmic	242	259	0.56
Transmembrane Helix	260	284	0.85
Cytoplasmic	285	296	0.59