YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373233, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHQIRKAV IPVAGLGTRM LPATKAIPKE MLPVVDKPLI QYVVSEAIAA GIKEIVLVTH  60
   61 ASKNSIENHF DTSFELEAQL ERRVKRQLLE AVQSICPKDV TVISVRQSQA KGLGHAILCA 120
  121 KSVVGDAPFA VLLPDVIIDE ASCDLKTDNL ASMVSLFDET QVGQIMVEGV PHHLVNQYGI 180
  181 ADVNGHDLQP GESEPLVELV EKPPVDEAPS NLAVVGRYVL PAAIWPLLAK TPAGAGDEIQ 240
  241 LTDAIAMLMK EETVNAYYMQ GKSHDCGNKQ GYMRANVEYA LRHSEIGEDF AHYLKTVVKG 300
  301 IK

Type	Start	End	Confidence
Signal Peptide	1	26	0.51
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	302	0.99