YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1634
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAVFLIAAK EWGRIIDSQC NVTQWSFTCT VGILLIALNL IVPADTIWLR GQIHPIYFAV  60
   61 VTIGALWWMV SLLLVLTYPK SAKLWQKNPM LKSMFGQLTL VPCFVALIAL KSISSQISPY 120
  121 YGASLVLLVM LIVWAADSGA YFVGKAVGKT KLMPAVSPAK TLEGLLGGLV TTLIVVAGVM 180
  181 VISPEQELGL VVAVTLFVAL ISALGDLSES MFKRAACIKD SGTILPGHGG VLDRIDSLTA 240
  241 ALPVFTLIYI AFWM

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	55	0.79
Transmembrane Helix	56	78	0.92
Cytoplasmic	79	93	0.88
Transmembrane Helix	94	113	0.93
Non-Cytoplasmic	114	120	0.80
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	161	0.91
Transmembrane Helix	162	182	0.93
Non-Cytoplasmic	183	188	0.81
Transmembrane Helix	189	208	0.92
Cytoplasmic	209	231	0.88
Transmembrane Helix	232	253	0.74
Non-Cytoplasmic	254	254	0.80