YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347409, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	56	0.90
Non-Cytoplasmic	57	67	0.79
Transmembrane Helix	68	90	0.90
Cytoplasmic	91	95	0.86
Transmembrane Helix	96	116	0.91
Non-Cytoplasmic	117	133	0.79
Transmembrane Helix	134	153	0.92
Cytoplasmic	154	170	0.90
Transmembrane Helix	171	191	0.91
Non-Cytoplasmic	192	267	0.81
Transmembrane Helix	268	289	0.74
Cytoplasmic	290	297	0.78
Transmembrane Helix	298	314	0.84
Non-Cytoplasmic	315	322	0.51
Transmembrane Helix	323	345	0.83
Cytoplasmic	346	352	0.45
Transmembrane Helix	353	368	0.42
Non-Cytoplasmic	369	371	0.39
Transmembrane Helix	372	395	0.80
Cytoplasmic	396	499	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKLESTRQ IRARRLGHFV TQQWFKFAQR LSQALLIPIA ILPAAGVMLG LTVSPIPFMP  60
   61 EVLNVLMLAV GKLIFAIMPI LFAVAVAIGF CRDQGIAAFT AVFGYGVMTA TLAALADLYQ 120
  121 LPTQLVLGME TLDTGIAGGM LIGGVTCFAV RWSQYIRLPA IFSFFEGRRS ASLLIIPLAM 180
  181 GLGYVLAHIW PSLSLLIERV SDWAVYQKPA IAFGVYGALE RLLIPLGLHH IWNAPFYLEV 240
  241 GQYQLQDAEV VRGEVARYLA GDPQAGNLAG GYLIKMWGLP AAALAIWRCA DNSERNRVAG 300
  301 IMLSAAAASW LTGVTEPIEF AFMFVAPLLF LIHVMLSGLA YFVCIMLDIH HSIVFSHGLV 360
  361 DFTLLFSLSR NTGWFAVLGP LTAVIYYILF RGSILAFNLK TPGRLQSDGT KGSKESLRAI 420
  421 IAALGGRDNI VELNACLTRL RLSVHSPELV NKVRLSQLGA KGVIVMGKGV QIVYGTKAET 480
  481 LRKVLQRYLD TRRYEVNCR