YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373096, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.80
Transmembrane Helix	6	23	0.91
Cytoplasmic	24	32	0.66
Transmembrane Helix	33	53	0.84
Non-Cytoplasmic	54	60	0.70
Transmembrane Helix	61	81	0.92
Cytoplasmic	82	100	0.83
Transmembrane Helix	101	122	0.83
Non-Cytoplasmic	123	126	0.55
Transmembrane Helix	127	150	0.74
Cytoplasmic	151	152	0.47
Transmembrane Helix	153	181	0.69
Non-Cytoplasmic	182	201	0.67
Transmembrane Helix	202	225	0.88
Cytoplasmic	226	234	0.93
Transmembrane Helix	235	255	0.95
Non-Cytoplasmic	256	262	0.78
Transmembrane Helix	263	285	0.85
Cytoplasmic	286	315	0.96
Transmembrane Helix	316	338	0.86
Non-Cytoplasmic	339	358	0.90
Transmembrane Helix	359	380	0.94
Cytoplasmic	381	391	0.90
Transmembrane Helix	392	416	0.71
Non-Cytoplasmic	417	422	0.53
Transmembrane Helix	423	448	0.69
Cytoplasmic	449	449	0.42
Transmembrane Helix	450	472	0.76
Non-Cytoplasmic	473	491	0.74
Transmembrane Helix	492	515	0.84
Cytoplasmic	516	525	0.80
Transmembrane Helix	526	545	0.92
Non-Cytoplasmic	546	547	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILQLFASL TPVLSVMIFL VLLRMPASKA MPISMVVTAI AAVFIWQMDT TLLAASVVEG  60
   61 LLSAITPLTI IFGAVFLLNT LKYSGAMDTI RAGFTNISAD ARVQVIIICW LFGAFIEGSA 120
  121 GFGTPAAIGA PLLVLLGVPP VAAAVVALIA DSACVSFGAI GLPVLFGMEQ GLIQGGVSMA 180
  181 AEQFAAHGGT YAGYARYIVM HMITIDLITG TLIPLVMVTM LTGFFGRNKS FKEGLAIWKF 240
  241 AIFSGLAFTV PAWIINYLAG PEFPSVIGAL IGMAMVIPVA RKGYLLPKTP WNDFAENDNQ 300
  301 DGVKLETTAK FSQIAAWTPY IIMAALLVLS RTVAPLKAWL SGFNINWTGL LGTELKASFA 360
  361 TLYAPGAFFV AVCILGFFLF KMKSPAIKQS IGVSCKSMLP TIISLGASVP MVKIFLNSGA 420
  421 NGAGLASMPV ALADMLASSM GAVWAWMAPI VGIFGAFLSG SATFSNMMFS SLQYSVADNI 480
  481 GMNHTLVLAL QGIGANAGNM MCVMNVVAAA TVVGMAGRES EIIRKTMPVA IGYALLAGTI 540
  541 ATLWGGF