YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373055, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	24	0.89
Cytoplasmic	25	31	0.60
Transmembrane Helix	32	50	0.76
Non-Cytoplasmic	51	54	0.80
Transmembrane Helix	55	75	0.90
Cytoplasmic	76	85	0.80
Transmembrane Helix	86	107	0.90
Non-Cytoplasmic	108	114	0.65
Transmembrane Helix	115	134	0.94
Cytoplasmic	135	149	0.87
Transmembrane Helix	150	171	0.91
Non-Cytoplasmic	172	181	0.86
Transmembrane Helix	182	202	0.94
Cytoplasmic	203	211	0.82
Transmembrane Helix	212	230	0.91
Non-Cytoplasmic	231	235	0.68
Transmembrane Helix	236	256	0.89
Cytoplasmic	257	266	0.84
Transmembrane Helix	267	287	0.88
Non-Cytoplasmic	288	292	0.78
Transmembrane Helix	293	314	0.92
Cytoplasmic	315	324	0.80
Transmembrane Helix	325	345	0.91
Non-Cytoplasmic	346	354	0.85
Transmembrane Helix	355	377	0.91
Cytoplasmic	378	589	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESSLLTSV LLFLLAAVIF VPLGKRFGAG PILSYLAAGV ILGPGGMALV SDPAAVLHFA  60
   61 ELGVVLMLFV LGLELNPSKL WELRSAIFGL GSGQLLLSWA AIGGLAWGFG LSIEAALVVG 120
  121 AALSLSSTAF AVQLMSEHRL LTTPLGRDAF GVLLMQDLAV IPMLLLTAYL APNSAQIEHH 180
  181 AVPWYWTCVA LIGFVLVGKY LLPRVLKLVA SSGVREVLTA FALLLVMGSA QLMEWLGLSA 240
  241 GMGAFLAGIM LANSSYRHQL ETDIEPFKGL LLGLFFMAVG MSMDLKLFLT DPLLILAILL 300
  301 GMLLIKTLVL MLLGRVRHHT WRPSIALGLI LAEGGEFAFV LLSQAQLSSI VDDKIAQILV 360
  361 LAIGLSMAVT PMIFTLFRAT KPKVVDTRLP DTINVTESEV VIAGFGRVGQ ITGRILASSG 420
  421 IPFVALDKDA SHVDVIRQYG GEVYFGDARR LDMLMSAGIA RSRLLLLAVD SVEDSIEIAQ 480
  481 QVKTHFPHIN IIARARDRNH AYRLMSLGVT DVFRETFGSA LSASEKILQG LGLSQVQANE 540
  541 RVKIFAEHDK KLVIASAAHQ NDLAKLIDLS NKGKAELESL MRGDRENVS